Sorted by Authors

Publications - Sorted by Authors

• Sabdyusheva Litschauer I, Becker K, Saghafi S, Ballke S, Bollwein C, Foroughipour M, Gaugeler J, Foroughipour M, Schavelová V, László V, Döme B, Brostjan C, Weichert W, Dodt H (2020) 3D histopathology of human tumours by fast clearing and ultramicroscopy Sci Rep, 10 (1)
• Koch E, Bongrand C, Bennett B, Lawhorn S, Moriano-Gutierrez S, Pende M, Vadiwala K, Dodt H, Raible F, Goldman W, Ruby E, McFall-Ngai M (2020) The cytokine MIF controls daily rhythms of symbiont nutrition in an animal–bacterial association PNAS, : 202016864
• Pende M, Vadiwala K, Schmidbaur H, Stockinger A, Murawala P, Saghafi S, Dekens M, Becker K, Revilla-i-Domingo R, Papadopoulos S, Zurl M, Pasierbek P, Simakov O, Tanaka E, Raible F, Dodt H (2020) A versatile depigmentation, clearing, and labeling method for exploring nervous system diversity Sci Adv, 6 (22): eaba0365
• Ueda H, Dodt H, Osten P, Economo M, Chandrashekar J, Keller P (2020) Whole-Brain Profiling of Cells and Circuits in Mammals by Tissue Clearing and Light-Sheet Microscopy Neuron, 106 (3): 369-387

• K.Becker C. Hahn, N. Jaehrling, M Pende, I. Sabdyusheva-Litschauer, S. Saghafi, M. Wanis, H.U-Dodt (2020) Chemical Clearing of Brains. , CRC Press

• Hahn C, Becker K, Saghafi S, Pende M, Avdibašić A, Foroughipour M, Heinz D, Wotjak C, Dodt H (2019) High‐resolution imaging of fluorescent whole mouse brains using stabilised organic media (sDISCO) J. Biophot., : e201800368

• Mano T, Albanese A, Dodt H, Erturk A, Gradinaru V, Treweek J, Miyawaki A, Chung K, Ueda H (2018) Whole-Brain Analysis of Cells and Circuits by Tissue Clearing and Light-Sheet Microscopy J. Neurosci., 38 (44): 9330-9337
• Pende M, Becker K, Wanis M, Saghafi S, Kaur R, Hahn C, Pende N, Foroughipour M, Hummel T, Dodt H (2018) High-resolution ultramicroscopy of the developing and adult nervous system in optically cleared Drosophila melanogaster Nat Commun, 9 (1)
• Saghafi S, Haghi-Danaloo N, Becker K, Sabdyusheva I, Foroughipour M, Hahn C, Pende M, Wanis M, Bergmann M, Stift J, Hegedus B, Dome B, Dodt H (2018) Reshaping a multimode laser beam into a constructed Gaussian beam for generating a thin light sheet J. Biophot., 11 (6): e201700213

• Jährling N, Becker K, Saghafi S, Dodt H (2017) Light-Sheet Fluorescence Microscopy: Chemical Clearing and Labeling Protocols for Ultramicroscopy. In: , Methods in Molecular Biology Springer: 33-49
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• Bulantová J, Macháček T, Panská L, Krejčí F, Karch J, Jährling N, Saghafi S, Dodt H, Horák P (2016) Trichobilharzia regenti (Schistosomatidae): 3D imaging techniques in characterization of larval migration through the CNS of vertebrates Micron, 83: 62-71

• Dodt H (2015) The superresolved brain Science, 347 (6221): 474-475
• Jährling N, Becker K, Wegenast-Braun B, Grathwohl S, Jucker M, Dodt H (2015) Cerebral β-Amyloidosis in Mice Investigated by Ultramicroscopy PLoS One, 10 (5): e0125418

• Saghafi S, Becker K, Hahn C, Dodt HU (2014) 3D-ultramicroscopy utilizing aspheric optics J. Biophot., 7: 117-125

• Jährling N, Saghafi S, Becker K, Mauch C, Dodt H (2013) P 227. Ultramicroscopy (UM) in neurobiology Clin Neurophysiol, 124 (10): e174
• Gewies A, Castineiras-Vilarino M, Ferch U, Jährling N, Heinrich K, Hoeckendorf U, Przemeck GK, Munding M, Groß O, Schroeder T, Hrabe de Angelis M, Dodt HU, Peschel C, Förtser I, Dyer MJ, Ruland J. (2013) Prdm6 is essential for cardiovascular development in vivo PLoS.ONE., 8: e81833
• Rozhin Penjweini, Soheila Mokmeli, Klaus Becker, Hans-Ulrich Dodt, and Saghafi (2013) Effects of UV-, Visible-, Near-infrared Beams in Three Therapy Resistance Case Studies of Fungal Skin infections Optics and Photonics Journal, 3: 10.4236/opj.2013.37A001
• Saghafi S, Becker K, Hahn C, Dodt H U (2013) Light Sheet Microscopy: High resolution 3D Microscopic views beneath the surface Imaging & Microscopy, 15: 22-24

• Klaus Becker, Nina Jährling, Saiedeh Saghafi, and Hans-Ulrich Dodt (2013) Dehydration and Clearing of Whole Mouse Brains and Dissected Hippocampi for Ultramicroscopy. In: , Cold Spring Harbor Protocols John Inglis: 10.1101/pdb.prot075820
• Klaus Becker, Nina Jährling, Saiedeh Saghafi, and Hans-Ulrich Dodt (2013) Dehydration and Clearing of Adult Drosophila for Ultramicroscopy. In: , Cold Spring Harbor Protocols John Inglis: doi:10.1101/pdb.prot075812
• Klaus Becker, Nina Jährling, Saiedeh Saghafi, and Hans-Ulrich Dodt (2013) Immunostaining, Dehydration, and Clearing of Mouse Embryos for Ultramicroscopy. In: , Cold Spring Harbor Protocols John Inglis: 743-4
• Klaus Becker, Nina Jährling, Saiedeh Saghafi, and Hans-Ulrich Dodt (2013) Ultramicroscopy: Light-Sheet-Based Microscopy for Imaging Centimeter-Sized Objects with Micrometer Resolution. In: , Cold Spring Harbor Protocols John Inglis: 704-13

• Ertürk A, Becker K, Jährling N, Mauch CP, Hojer C, Egen J, Hellal F, Bradke F, Sheng M, Dodt HU (2012) Three-dimensional imaging of solvent-cleared organs using 3DISCO - pp 1983 - 1995 Nat Protoc, 7: 1983-1995
• Becker K, Jährling N, Saghafi S, Weiler R, Dodt HU (2012) Chemical clearing and dehydration of GFP expressing mouse brains PLoS.ONE., 7(3): e33916
• Becker K, Eder M, Ranft A, von Meyer L, Zieglgansberger W, Kochs E, Dodt HU (2012) Low dose isoflurane exerts opposing effects on neuronal network excitability in neocortex and hippocampus PLoS.ONE., 7(6): e39346
• Ertürk A, Mauch CP, Hellal F, Förstner F, Keck T, Becker K, Jährling N, Steffens H, Richter M, Hübener M, Kramer E, Kirchhoff F, Dodt HU, Bradke F (2012) Three-dimensional imaging of the unsectioned adult spinal cord to assess axon regeneration and glial responses after injury Nat Med, 18: 166-171
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• Schönbauer C, Distler J, Jährling N, Radolf M, Dodt HU, Frasch M, Schnorrer F (2011) Spalt mediates an evolutionarily conserved switch to fibrillar muscle fate in insects. Nature, 479: 406-409
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• Keller P, Dodt H.-U. (2011) Light sheet microscopy of living or cleared specimens Curr Opin Neurol, 22: 1-6

• Dodt H.-U., Eder M , Schierloh A, Zieglgänsberger W (2011) Infrared-guided neurotransmitter uncaging on dendrites. In: , Imaging in Neuroscience: A laboratory manual Cold Spring Harbor Press, New York: 387-391
• Becker K, Jährling N, Saghafi S, Dodt H.-U. (2011) Ultramicroscopy: Light-sheet based microscopy for imaging centimeter-sized objects with micrometer resolution.. In: , Imaging: A laboratory manual Cold Spring Harbor Laboratory Press, New York 2011

• Müller M, Jagla M, Bodard LM, Jährling N, Dodt HU, Jagla K, Frasch M (2010) Regulation and functions of the lms homeobox gene during development of embryonic lateral transverse muscles and direct flight muscles in Drosophila PLoS.ONE., 5: 1-16
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• Ehsani H, Saghafi S, Ghoranneviss M, Hantezadeh M, Hosseini H, Dodt HU (2010) Alteration of optical and morphological properties of polycarbonate illuminated by visible/IR laser beams J. Europ. Opt. Soc. Rap. Public., 5: 100325
• Saghafi S, Penjweini R, Becker K, Kratky W, Dodt HU (2010) Investigating the effects of laser beams (532 and 660nm) in the annihilation of pistachio mould fungus using spectrophotometry J. Europ. Opt. Soc. Rap. Public., 5: 10033s
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• Saghafi S, Becker K, Jährling N, Richter R, Kramer ER, Dodt HU (2010) Image enhancement in ultramicroscopy by improved laser light sheets J. Biophot., 3: 686-695
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• Kalchmair S, Jährling N, Becker K, Dodt HU (2010) Image contrast enhancement in confocal ultramicroscopy Optics Letters, 35: 79-81
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• Becker K, Schneider G, Eder3 M, Ranft A, Kochs EF, Zieglgänsberger W, and Dodt HU (2010) Anaesthesia Monitoring by Recurrence Quantification Analysis of EEG Data PLoS.ONE., 5: e8876
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• Jährling N, Becker K, and Dodt HU (2009) 3D-reconstruction of blood vessels by ultramicroscopy Organogenesis, 5: 227-230
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• Leischner U, Zieglgänsberger W, Dodt HU (2009) Resolution of ultramicroscopy and field of view analysis PLoS.ONE., 4: e5785

• Deininger K, Eder M, Kramer ER, Zieglgänsberger W, Dodt HU, Dornmair K, Colicelli J, Klein R (2008) The Rab5 guanylate exchange factor Rin1 regulates endocytosis of the EphA4 receptor in mature excitatory neurons Proc Natl Acad Sci USA, 105: 12539-44
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• Jährling N, Becker K, Kramer ER, Dodt H.-U. (2008) 3D-Visualization of nerve fiber bundles by ultramicroscopy Med Laser Appl, 23: 209-215
• Becker K, Jährling N, Kramer ER,Schnorrer F,Dodt H.-U. (2008) Ultramicroscopy: 3D reconstruction of large microscopical specimens J. Biophot., 1: 36-42

• Ranft A, Kurz J, Becker K, Dodt H.-U., Zieglgänsberger W, Rammes G, Kochs E, Eder M. (2007) Nitrous oxide (N2O) pre- and postsynaptically attenuates NMDA receptor-mediated neurotransmission in the amygdala Neuropharmacology, 52: 716-723
• Dodt H.-U., Leischner U, Schierloh A, Jährling N, Mauch CP, Deininger K, Deussing JM, Eder M, Zieglgänsberger W, Becker K (2007) Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain Nat. Methods, 4: 331-6

• Monory K, Massa F, Egertova M, Eder M, Blaudzun H, Westenbroek R, Kelsch W, Jacob W, Marsch, R, Ekker M, Long J, Rubenstein JL, Goebbels S, Nave KA, During M, Klugmann M, Dodt H.-U., Lutz B (2006) The endocannabinoid system controls key epileptogenic circuits in the hippocampus Neuron, 51: 455-466
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• Domenici MR, Azad SC, Marsicano G, Schierloh A, Wotjak CT, Dodt H.-U., Zieglgänsberger W, Lutz B, Rammes G (2006) Cannabinoid receptor type 1 located on presynaptic terminals of principal neurons in the forebrain controls glutamatergic synaptic transmission J Neurosci, 26: 5794-5799

• Becker K, Eder M, Zieglgänsberger W, Dodt H.-U. (2005) WIN 55,212-2 decreases the spatial spread of neocortical excitation in vitro Neuroreport, 16: 993-96

• Azad SC, Eder M, Simon W, Hapfelmeier G, Dodt HU, Zieglgänsberger W, Rammes G (2004) The potassium channel modulator flupirtine shifts the frequency-response function of hippocampal synapses to favour LTD in mice Neurosci Lett, 370: 186-90
• Ranft A, Kurz J, Deuringer M, Haseneder R, Dodt HU, Zieglgänsberger W, Kochs E, Eder M, Hapfelmeier G (2004) Isoflurane modulates glutamatergic and GABAergic neurotransmission in the amygdala Eur J Neurosci, 20: 1276-80
• Schierloh A, Eder M, Zieglgänsberger W, Dodt HU (2004) Effects of sensory deprivation on columnar organization of neuronal circuits in the rat barrel cortex Eur J Neurosci, 20: 1118-24
• Haseneder R, Kurz J, Dodt HU, Kochs E, Zieglgänsberger W, Scheller M, Rammes G, Hapelmeier G (2004) Isoflurane reduces glutamatergic transmission in neurons in the spinal cord superficial dorsal horn – evidence for a presynaptic site of an analgesic action Anesth. Analg., 98: 1718-23